R-universe packaging

Author: SidRichardsQuantum

.Rbuildignore

@@ -1,4 +1,5 @@
 ^\.github$
+^\.gitattributes$
 ^\.codex$
 ^\.agents$
 ^_site$

.gitattributes

@@ -0,0 +1,21 @@
+* text=auto eol=lf
+
+*.R text eol=lf
+*.Rmd text eol=lf
+*.md text eol=lf
+*.py text eol=lf
+*.json text eol=lf
+*.csv text eol=lf
+*.html text eol=lf
+*.yml text eol=lf
+*.yaml text eol=lf
+
+*.png binary
+*.jpg binary
+*.jpeg binary
+*.gif binary
+*.pdf binary
+*.tar.gz binary
+
+/analysis/generated/** linguist-generated=true
+/images/** linguist-generated=true

.gitignore

@@ -1,30 +1,45 @@
-.codex/
-.codex
-
 # R session and project-local state
 .Rhistory
 .RData
 .Ruserdata
 Rplots.pdf
 .Rproj.user/
+.Rproj
 renv/library/
 renv/staging/
+renv/python/
+renv/sandbox/
 
-# Local scratch output
-tmp/
-scratch/
-_site/
-*.log
+# R package build/check output
 *.tar.gz
 *.Rcheck/
+*.Rcheck
+check/
+Meta/
+
+# Local generated site and scratch output
+_site/
+*.log
+tmp/
+scratch/
+
+# Codex/agent-local state
+.codex/
+.codex
+.agents/
+.agents
 
 # Python environments and caches
 __pycache__/
 *.py[cod]
+.pytest_cache/
+.mypy_cache/
 .venv/
 venv/
 env/
 
 # Local OS/editor files
 .DS_Store
 Thumbs.db
+.idea/
+.vscode/

README.md

@@ -48,7 +48,7 @@ install.packages("remotes")
 remotes::install_github("SidRichardsQuantum/Celestial_Dynamics_Iteration_Methods")
 ```
 
-After the R-universe registry has been created, install from R-universe:
+After R-universe has built the package, install from R-universe:
 
 ```r
 options(repos = c(
@@ -58,7 +58,7 @@ options(repos = c(
 install.packages("CelestialDynamicsIterationMethods")
 ```
 
-R-universe setup notes and the required registry file are in
+R-universe setup notes and the registry details are in
 [docs/R_UNIVERSE.md](docs/R_UNIVERSE.md).
 
 Run all validations:

docs/R_UNIVERSE.md

@@ -5,13 +5,13 @@ a separate GitHub repository under the same account.
 
 ## Registry Repository
 
-Create this public GitHub repository:
+The public R-universe registry repository is:
 
 ```text
 SidRichardsQuantum/sidrichardsquantum.r-universe.dev
 ```
 
-Add a root-level `packages.json` file with:
+Its root-level `packages.json` file should contain:
 
 ```json
 [
@@ -22,7 +22,7 @@ Add a root-level `packages.json` file with:
 ]
 ```
 
-Then install the R-universe GitHub app for the `SidRichardsQuantum` account:
+Install the R-universe GitHub app for the `SidRichardsQuantum` account:
 
 ```text
 https://github.com/apps/r-universe

docs/USAGE.md

@@ -9,7 +9,7 @@ install.packages("remotes")
 remotes::install_github("SidRichardsQuantum/Celestial_Dynamics_Iteration_Methods")
 ```
 
-After the R-universe registry has been created, install from R-universe:
+After R-universe has built the package, install from R-universe:
 
 ```r
 options(repos = c(
@@ -19,7 +19,7 @@ options(repos = c(
 install.packages("CelestialDynamicsIterationMethods")
 ```
 
-R-universe setup notes and the required registry file are in
+R-universe setup notes and the registry details are in
 [docs/R_UNIVERSE.md](R_UNIVERSE.md).
 
 For source checkouts: