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<a href="http://www.bio.whu.edu.cn/" title="Home of Bio.WHU" target="_blank">Dept. of Biochemistry, CLS, WHU</a>
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<h3>Publications: <a href="http://www.ncbi.nlm.nih.gov/pubmed/?term=yong-zhen%20xu"><img src="logo/pubmed.jpg" width="68" height="24" align="absmiddle" /></a></h3>
<p class="STYLE16"><strong><sup>#</sup> : contribute equally, <sup>*</sup> : corresponding author.</strong></p>
<ol>
<li class="STYLE16">
<p>Ding Z, Meng YR, Fan YJ, <strong>Xu YZ</strong><sup>*</sup>. (2022) Roles of minor spliceosome in intron recognition and the convergence with the better understood major spliceosome. <strong><em>WIREs RNA</em></strong> e1761.<a href="Publications/2022_DingZ_et_al_WIREsRNA.pdf"> <span class="icon-document-file-pdf1"></span></a></p></p>
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<p>Gui XM<sup>#</sup>, Zhang P<sup>#</sup>, Wang D<sup>#</sup>, Ding Z<sup>#</sup>, Wu X, Shi JX, Shen QH, <strong>Xu YZ</strong>, Ma WB and Qiao YL<sup>*</sup>. (2022) <em>Phytophthora</em> effector PSR1 hijacks the host pre-mRNA splicing machinery to modulate small RNA biogenesis and plant immunity. <strong><em>Plant Cell</em></strong>, 34(9), 3443–3459.</p>
</li>
<li class="STYLE16">
<p>Tang P<sup>#</sup>, Yang Y<sup>#</sup>, Li G, Huang L, Wen M, Ruan W, Guo X, Zhang C, Zuo X, Luo D, <strong>Xu YZ</strong>, Fu XD<sup>*</sup>, & Zhou Y<sup>*</sup>. (2022) Alternative polyadenylation by sequential activation of distal and proximal PolyA sites. <strong><em>Nat Struct Mol Biol</em></strong> 29, 21–31.</p>
</li>
<li class="STYLE16">
<p>Zhang B<sup>#</sup>, Ding Z<sup>#</sup>, Li L, Xie LK, Fan YJ and <strong>Xu YZ</strong><sup>*</sup> (2021) Two oppositely-charged sf3b1 mutations cause defective development, impaired immune response, and aberrant selection of intronic branch sites in <em>Drosophila</em>. <strong><em>PLoS Genetics</em></strong> 17(11): e1009861.<a href="Publications/2021_ZhangB_et_al_PG.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Pang TL, Ding Z, Liang SB, Li L, Zhang B, Zhang Y, Fan YJ and <strong>Xu YZ</strong><sup>*</sup> (2021) Comprehensive identification and alternative splicing of microexons in <em>Drosophila</em>. <strong><em>Frontiers in Genetics</em></strong> 12: 642602.<a href="Publications/2021_PangTL_et_al_FG.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Li L, Ding Z, Pang TL, Zhang B, Li CH, Liang AM, Wang YR, Zhou Y, Fan YJ<sup>*</sup> and <strong>Xu YZ</strong><sup>*</sup> (2020) Defective minor spliceosomes induce SMA-associated phenotypes through sensitive intron-containing neural genes in <em>Drosophila</em>. <strong><em>Nature Communications</em></strong> 11(1):5608. <em>Recommended in the focus of “From Brain to Behaviour”.</em><a href="Publications/2020 Li Nat Commun.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Shao W, Ding Z, Zheng ZZ, Shen JJ, Shen YX, Pu J, Fan YJ, Query CC<sup>*</sup> and <strong>Xu YZ</strong><sup>*</sup> (2020) Prp5–Spt8/Spt3 interaction mediates a reciprocal coupling between splicing and transcription. <strong><em>Nucleic Acids Research</em></strong> 48, 5799–5813. <em>Selected as “Breakthrough Article”.</em><a href="Publications/Shao et al.,2020 NAR.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
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<li class="STYLE16">
<p>Cheng L, Zhang Y, Zhang Y, Chen T, <strong>Xu YZ</strong> and Rong YS<sup>*</sup> (2020) Loss of the RNA trimethylguanosine cap is compatible with nuclear accumulation of spliceosomal snRNAs but not pre-mRNA splicing or snRNA processing during animal development. <strong><em>PLoS Genetics</em></strong> 16(10): e1009098.</p>
</li>
<li class="STYLE16">
<p>Zhu Y, Wu W, Shao W, Chen J, Shi X, Ma X, <strong>Xu YZ</strong>, Huang W and Huang J<sup>*</sup> (2020) SPLICING FACTOR1 is important in chloroplast development under cold stress. <strong><em>Plant Physiology</em></strong> 184(2): 973-987. </p>
</li>
<li class="STYLE16">Zheng ZZ, Sun X, Zhang B, Pu J, Jiang ZY, Li M, Fan YJ and Xu YZ<sup>*</sup> (2019) Alternative splicing regulation of <em>doublesex</em> gene by RNA-binding proteins in the silkworm <em>Bombyx mori</em>. <strong><em>RNA Biology</em></strong>, 16: 809-820.<a href="Publications/Zhang-Zhang Zheng et al.,2019 RNA Bio.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p><span class="STYLE16">Qiu C<sup>#</sup>, Zhang Y<sup>#</sup>, Fan YJ<sup>#</sup>, Pang TL, Su Y, Zhan S<sup>*</sup> and Xu YZ<sup>*</sup> (2019) HITS-CLIP reveals sex-differential RNA binding and alterative splicing regulation of SRm160 in <em>Drosophila</em>. <strong><em>J Mol Cell Biol</em></strong>, 11: 170-181.<a href="Publications/ChenQiu et al.,2019 Jour of Mol Cell Bio.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p><span class="STYLE16">Lv M, Yao Y, Li F, Xu L, Yang L, Gong Q, Xu YZ, Shi Y, Fan YJ<sup>*</sup>, Tang Y<sup>*</sup> (2019) Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in <em>Drosophila</em>. <strong><em>Nucleic Acids Research</em></strong>, 47: 3142-3157.<a href="Publications/Mengqi et al.,2019 Nuc Aci Res.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p><span class="STYLE16">Tang Q<sup>#</sup>, Rodriguez-Santiago S<sup>#</sup>, Wang J, Pu J, Yuste A, Gupta V, Moldón A, Xu YZ<sup>*</sup> and Query CC<sup>*</sup> (2016) SF3B1/Hsh155 HEAT motif mutations affect interaction with the spliceosomal ATPase Prp5, resulting in altered branch site selectivity in pre-mRNA splicing. <strong><em>Genes & Development</em></strong>, 30: 2710-2723.<a href="Publications/QingTang et al.,2016 Gen & Dev.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p><span class="STYLE16">Gao JL<sup>#</sup>, Fan YJ<sup>#</sup>, Wang XY<sup>#</sup>, Zhang Y, Pu J, Li L, Shao W, Zhan S, Hao J and <strong>Xu YZ</strong><sup>*</sup></span>(2015) A conserved intronic U1 snRNP-binding sequence promotes <em>trans</em>-splicing in <em>Drosophila</em>. <strong><em>Genes & Development</em></strong> 29, 760-771, DOI: 10.1101/gad.258863.115. <a href="Publications/Gao-2015-A conserved intronic U1 snRNP-binding.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Qiu C, Liu WY<sup>*</sup> and <strong>Xu YZ</strong><sup>*</sup> (2015) Fluorescence labeling of short RNA by oxidation at the 3'-end. <strong><em>Methods in Molecular Biology </em></strong>1297, DOI 10.1007/978-1-4939-2562-9_8.</p>
</li>
<li class="STYLE16">
<p>Fan Y<sup>*</sup>, Gittis AH, Juge F, Qiu C, <strong>Xu YZ</strong> and Rabinow L<sup>*</sup> (2014) Multifunctional RNA processing protein SRm160 induces apoptosis and regulates eye and genital development in <em>Drosophila</em>. <strong><em>Genetics</em></strong> 197:1251-1265.<a href="Publications/fan.full.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Wang XY, Zheng ZZ, Song HS and <strong>Xu YZ</strong><sup>*</sup> (2014) Conserved RNA <em>cis</em>-elements regulate alternative splicing of <em>Lepidopteran doublesex</em>. <strong><em>Insect Biochemistry and Molecular Biology</em></strong> 44, 1-11.<a href="Publications/Wang et al., 2014 IBMB.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Zhang ZM<sup>#</sup>, Yang F<sup>#</sup>, Zhang J, Tang Q, Li J, Gu J, Zhou J.<sup>*</sup>and <strong>Xu YZ</strong><sup>*</sup> (2013) Crystal structure of Prp5p reveals interdomain interactions that impact spliceosome assembly. <strong><em>Cell Reports </em></strong>5, 1269-1278.<a href="Publications/Zhang et al., 2013 Cell Reports.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Yang F, Wang XY, Zhang ZM, Pu J, Fan YJ, Zhou J, Query CC and <strong>Xu YZ</strong><sup>*</sup>(2013) Splicing proofreading at 5' splice sites by ATPase Prp28p. <strong><em>Nucleic Acids Research</em></strong> 41, 4660-4670.<a href="Publications/Yang et al., 2013 NAR.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Shao W<sup>#</sup>, Zhao QY<sup>#</sup>, Wang XY, Xu XY, Li MW, Li X<sup>*</sup> and<strong> Xu YZ</strong><sup>*</sup> (2012) Alternative splicing and <em>trans</em>-splicing events revealed by analysis of the <em>Bombyx mori</em> transcriptome. <strong><em>RNA</em></strong> 18, 1395-407.<a href="Publications/Shao et al., 2012 RNA.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
</li>
<li class="STYLE16">
<p>Shao W, Kim HS, Cao Y, <strong>Xu YZ</strong><sup>*</sup> and Query CC<sup>*</sup> (2012) A U1–U2 snRNP interaction network during intron definition. <strong><em>Molecular and Cellular Biology </em></strong>32, 470-478.<a href="Publications/Shao et al., 2012 MCB.pdf"> <span class="icon-document-file-pdf1"></span></a></p>
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