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4894 lines (3150 loc) · 232 KB
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<?xml version="1.0"?>
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<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000104"/>
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<dc:description>Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.</dc:description>
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<dc:source rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
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<dc:source rdf:resource="http://purl.obolibrary.org/obo/wbbt.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/zfa.owl"/>
<dc:source rdf:resource="http://uri.neuinfo.org/nif/nifstd"/>
<dc:source rdf:resource="http://www.e-lico.eu/public/kupo/kupo.owl"/>
<dc:source rdf:resource="http://www.ebi.ac.uk/efo/efo.owl"/>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://wiki.phenotypercn.org/wiki/August_2012_Notes</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#</dc:source>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0</dc:source>
<dc:source>ISBN:0030229073 Invertebrate Zoology, Barnes</dc:source>
<dc:source>ISBN:0073040584 Vertebrates, Kardong</dc:source>
<dc:source>ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis</dc:source>
<dc:source>ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall</dc:source>
<dc:source>ISBN:0443065837 Human embryology, Larsen</dc:source>
<dc:source>ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos</dc:source>
<dc:source>ISBN:0683400088 Stedman's Medical Dictionary</dc:source>
<dc:source>ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher</dc:source>
<dc:source>ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack</dc:source>
<dc:source>ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber</dc:source>
<dc:source>ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody</dc:source>
<dc:source>ISBN:9780120749034 The laboratory rat</dc:source>
<dc:source>ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte</dc:source>
<dc:source>ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader</dc:source>
<dc:source>ISBN:9780878932504 Developmental Biology</dc:source>
<dc:source>MESH</dc:source>
<dc:source>PMID:11433360 Placental development: lessons from mouse mutants</dc:source>
<dc:source>PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen</dc:source>
<dc:source>aggregates AAO from 13:04:2012</dc:source>
<dc:source>aggregates TAO from 09:08:2012</dc:source>
<dc:source>aggregates VSAO from 16:07:2012</dc:source>
<dc:title>Uber-anatomy ontology</dc:title>
<terms:contributor rdf:resource="https://github.com/orgs/pato-ontology/teams/pato-community"/>
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<terms:isReferencedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://genomebiology.com/2012/13/1/R5</terms:isReferencedBy>
<terms:isReferencedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://www.ncbi.nlm.nih.gov/pubmed/22293552</terms:isReferencedBy>
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<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2025-08-01 02:45:30</oboInOwl:date>
<oboInOwl:default-namespace>uberon</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion>1.2</oboInOwl:hasOBOFormatVersion>
<oboInOwl:treat-xrefs-as-equivalent>AEO</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>BILA</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>BSPO</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>CARO</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>GO</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>OG</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-equivalent>VSAO</oboInOwl:treat-xrefs-as-equivalent>
<oboInOwl:treat-xrefs-as-has-subclass>EHDAA</oboInOwl:treat-xrefs-as-has-subclass>
<oboInOwl:treat-xrefs-as-has-subclass>EV</oboInOwl:treat-xrefs-as-has-subclass>
<oboInOwl:treat-xrefs-as-has-subclass>NCIT</oboInOwl:treat-xrefs-as-has-subclass>
<oboInOwl:treat-xrefs-as-has-subclass>OGES</oboInOwl:treat-xrefs-as-has-subclass>
<oboInOwl:treat-xrefs-as-has-subclass>SCTID</oboInOwl:treat-xrefs-as-has-subclass>
<oboInOwl:treat-xrefs-as-is_a>BFO</oboInOwl:treat-xrefs-as-is_a>
<oboInOwl:treat-xrefs-as-is_a>VHOG</oboInOwl:treat-xrefs-as-is_a>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>AAO part_of NCBITaxon:8292</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>DHBA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>EHDAA2 part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>EMAPA part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>FBdv part_of NCBITaxon:7227</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>FMA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>HAO part_of NCBITaxon:7399</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>HBA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>KUPO part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>MA part_of NCBITaxon:10090</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>MFO part_of NCBITaxon:8089</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>PBA part_of NCBITaxon:9443</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>SPD part_of NCBITaxon:6893</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>TADS part_of NCBITaxon:6939</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>TAO part_of NCBITaxon:32443</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>TGMA part_of NCBITaxon:44484</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>WBbt part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>WBls part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>XAO part_of NCBITaxon:8353</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>ZFA part_of NCBITaxon:7954</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<oboInOwl:treat-xrefs-as-reverse-genus-differentia>ZFS part_of NCBITaxon:7954</oboInOwl:treat-xrefs-as-reverse-genus-differentia>
<rdfs:comment>Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found.</rdfs:comment>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://uberon.org</foaf:homepage>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<obo:IAO_0000115 xml:lang="en">A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.</obo:IAO_0000115>
<oboInOwl:hasDbXref>IAO:0000112</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>example_of_usage</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>example_of_usage</oboInOwl:shorthand>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
<rdfs:label>example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.</obo:IAO_0000116>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<oboInOwl:hasDbXref>IAO:0000116</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>editor_note</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>editor_note</oboInOwl:shorthand>
<rdfs:label xml:lang="en">editor note</rdfs:label>
<rdfs:label>editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
<obo:IAO_0000115 xml:lang="en">Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.</obo:IAO_0000115>
<rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<oboInOwl:hasDbXref>IAO:0000232</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>curator_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>curator_notes</oboInOwl:shorthand>
<rdfs:label xml:lang="en">curator note</rdfs:label>
<rdfs:label>curator note</rdfs:label>
<rdfs:label>curator notes</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233">
<obo:IAO_0000112 xml:lang="en">the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An IRI or similar locator for a request or discussion of an ontology term.</obo:IAO_0000115>
<oboInOwl:hasDbXref>IAO:0000233</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>term_tracker_item</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>term_tracker_item</oboInOwl:shorthand>
<rdfs:comment xml:lang="en">The 'tracker item' can associate a tracker with a specific ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">term tracker item</rdfs:label>
<rdfs:label>term tracker item</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000589"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000700 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000700"/>
<!-- http://purl.obolibrary.org/obo/IAO_0006012 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0006012">
<obo:IAO_0000115 xml:lang="en">Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date.</obo:IAO_0000115>
<obo:IAO_0000233 xml:lang="en">https://github.com/geneontology/go-ontology/issues/15532</obo:IAO_0000233>
<obo:IAO_0000233 xml:lang="en">https://github.com/information-artifact-ontology/ontology-metadata/issues/32</obo:IAO_0000233>
<oboInOwl:hasDbXref>IAO:0006012</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>scheduled_for_obsoletion_on_or_after</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>scheduled_for_obsoletion_on_or_after</oboInOwl:shorthand>
<rdfs:label xml:lang="en">scheduled for obsoletion on or after</rdfs:label>
<rdfs:label>scheduled for obsoletion on or after</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
<rdfs:label>term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OMO_0002000 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0002000"/>
<!-- http://purl.obolibrary.org/obo/OMO_0003000 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003000">
<obo:IAO_0000112>CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)</obo:IAO_0000112>
<obo:IAO_0000115>A synonym type for describing abbreviations or initalisms</obo:IAO_0000115>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
<rdfs:label>abbreviation</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OMO_0003002 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003002">
<obo:IAO_0000115>A synonym type for describing dubious synonyms</obo:IAO_0000115>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
<rdfs:label>dubious synonym</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OMO_0003003 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003003">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OMO_0003004 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003004">
<obo:IAO_0000112>CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)</obo:IAO_0000112>
<obo:IAO_0000115>A synonym type for describing pluralization synonyms</obo:IAO_0000115>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
<rdfs:label>plural form</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OMO_0003011 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003011">
<obo:IAO_0000112>nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis</obo:IAO_0000112>
<obo:IAO_0000115>A synonym type for describing Latin term synonyms.</obo:IAO_0000115>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/146"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-1773-2692"/>
<rdfs:label>latin term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002161 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002161">
<obo:IAO_0000112>tooth SubClassOf 'never in taxon' value 'Aves'</obo:IAO_0000112>
<obo:IAO_0000115>x never in taxon T if and only if T is a class, and x does not instantiate the class expression "in taxon some T". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.</obo:IAO_0000115>
<obo:OMO_0002000>PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX in_taxon: <http://purl.obolibrary.org/obo/RO_0002162>
PREFIX never_in_taxon: <http://purl.obolibrary.org/obo/RO_0002161>
CONSTRUCT {
in_taxon: a owl:ObjectProperty .
?x owl:disjointWith [
a owl:Restriction ;
owl:onProperty in_taxon: ;
owl:someValuesFrom ?taxon
] .
?x rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty in_taxon: ;
owl:someValuesFrom [
a owl:Class ;
owl:complementOf ?taxon
]
] .
}
WHERE {
?x never_in_taxon: ?taxon .
}</obo:OMO_0002000>
<oboInOwl:hasDbXref>RO:0002161</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>never_in_taxon</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>never_in_taxon</oboInOwl:shorthand>
<rdfs:label>never in taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002171 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002171">
<obo:IAO_0000115>A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B.</obo:IAO_0000115>
<obo:OMO_0002000>PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX part_of: <http://purl.obolibrary.org/obo/BFO_0000050>
PREFIX mutually_spatially_disjoint_with: <http://purl.obolibrary.org/obo/RO_0002171>
CONSTRUCT {
part_of: a owl:ObjectProperty .
[
a owl:Restriction ;
owl:onProperty part_of: ;
owl:someValuesFrom ?x ;
owl:disjointWith [
a owl:Restriction ;
owl:onProperty part_of: ;
owl:someValuesFrom ?y
]
]
}
WHERE {
?x mutually_spatially_disjoint_with: ?y .
}</obo:OMO_0002000>
<oboInOwl:hasDbXref>RO:0002171</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>mutually_spatially_disjoint_with</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>mutually_spatially_disjoint_with</oboInOwl:shorthand>
<rdfs:label xml:lang="en">mutually spatially disjoint with</rdfs:label>
<rdfs:label>mutually spatially disjoint with</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/RO_0002163"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002173 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002173">
<obo:IAO_0000115>S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]</obo:IAO_0000115>
<oboInOwl:hasDbXref>RO:0002173</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>ambiguous_for_taxon</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>ambiguous_for_taxon</oboInOwl:shorthand>
<rdfs:label xml:lang="en">ambiguous for taxon</rdfs:label>
<rdfs:label>ambiguous for taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002174 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002174">
<obo:IAO_0000115>S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.</obo:IAO_0000115>
<oboInOwl:hasDbXref>RO:0002174</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>dubious_for_taxon</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>dubious_for_taxon</oboInOwl:shorthand>
<rdfs:comment>This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost</rdfs:comment>
<rdfs:label xml:lang="en">dubious for taxon</rdfs:label>
<rdfs:label>dubious for taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002175 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002175">
<obo:IAO_0000115>S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S</obo:IAO_0000115>
<obo:OMO_0002000>PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX in_taxon: <http://purl.obolibrary.org/obo/RO_0002162>
PREFIX present_in_taxon: <http://purl.obolibrary.org/obo/RO_0002175>
CONSTRUCT {
in_taxon: a owl:ObjectProperty .
?witness rdfs:label ?label .
?witness rdfs:subClassOf ?x .
?witness rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty in_taxon: ;
owl:someValuesFrom ?taxon
] .
}
WHERE {
?x present_in_taxon: ?taxon .
BIND(IRI(CONCAT(
"http://purl.obolibrary.org/obo/RO_0002175#",
MD5(STR(?x)),
"-",
MD5(STR(?taxon))
)) as ?witness)
BIND(CONCAT(STR(?x), " in taxon ", STR(?taxon)) AS ?label)
}</obo:OMO_0002000>
<oboInOwl:hasDbXref>RO:0002175</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>present_in_taxon</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>present_in_taxon</oboInOwl:shorthand>
<rdfs:comment>The SPARQL expansion for this relation introduces new named classes into the ontology. For this reason it is likely that the expansion should only be performed during a QC pipeline; the expanded output should usually not be included in a published version of the ontology.</rdfs:comment>
<rdfs:label xml:lang="en">present in taxon</rdfs:label>
<rdfs:label>present in taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002259 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002259">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002475 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002475">
<obo:IAO_0000112>'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'</obo:IAO_0000112>
<obo:IAO_0000115>A is has_no_connections_with B if there are no parts of A or B that have a connection with the other.</obo:IAO_0000115>
<oboInOwl:hasDbXref>RO:0002475</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>has_no_connections_with</oboInOwl:id>
<oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>has_no_connections_with</oboInOwl:shorthand>
<rdfs:label>has no connections with</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000001">
<obo:IAO_0000115>An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000001</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>external_definition</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>external_definition</oboInOwl:shorthand>
<rdfs:comment>This annotation property may be replaced with an annotation property from an external ontology such as IAO</rdfs:comment>
<rdfs:label>external_definition</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000002 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000002">
<obo:IAO_0000115>A textual description of an axiom loss in this ontology compared to an external ontology.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000002</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>axiom_lost_from_external_ontology</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>axiom_lost_from_external_ontology</oboInOwl:shorthand>
<rdfs:comment>This annotation property may be replaced with an annotation property from an external ontology such as IAO</rdfs:comment>
<rdfs:label>axiom_lost_from_external_ontology</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A textual description of an axiom loss in this ontology compared to an external ontology.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000003 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000003">
<obo:IAO_0000115>Notes on the homology status of this class.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>homology_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>homology_notes</oboInOwl:shorthand>
<rdfs:comment>This annotation property may be replaced with an annotation property from an external ontology such as IAO</rdfs:comment>
<rdfs:label>homology_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the homology status of this class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000004 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000004">
<oboInOwl:hasDbXref>UBPROP:0000004</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>provenance_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>provenance_notes</oboInOwl:shorthand>
<rdfs:label>provenance_notes</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000005 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000005">
<obo:IAO_0000115>An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000005</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>external_comment</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>external_comment</oboInOwl:shorthand>
<rdfs:comment>This annotation property may be replaced with an annotation property from an external ontology such as IAO</rdfs:comment>
<rdfs:label>external_comment</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000005"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000006 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000006">
<oboInOwl:hasDbXref>UBPROP:0000006</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>implements_design_pattern</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>implements_design_pattern</oboInOwl:shorthand>
<rdfs:label>implements_design_pattern</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000007 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000007">
<obo:IAO_0000232>Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'.</obo:IAO_0000232>
<oboInOwl:hasDbXref>UBPROP:0000007</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>has_relational_adjective</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>has_relational_adjective</oboInOwl:shorthand>
<rdfs:label>has_relational_adjective</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000008 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000008">
<obo:IAO_0000115>Notes on the how instances of this class vary across species.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000008</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>taxon_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>taxon_notes</oboInOwl:shorthand>
<rdfs:label>taxon_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the how instances of this class vary across species.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000009 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000009">
<obo:IAO_0000115>Notes on the evolved function of instances of this class.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000009</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>function_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>function_notes</oboInOwl:shorthand>
<rdfs:label>function_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000009"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the evolved function of instances of this class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000010 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000010">
<obo:IAO_0000115>Notes on the structure, composition or histology of instances of this class.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000010</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>structure_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>structure_notes</oboInOwl:shorthand>
<rdfs:label>structure_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000010"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the structure, composition or histology of instances of this class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000011 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000011">
<obo:IAO_0000115>Notes on the ontogenic development of instances of this class.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000011</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>development_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>development_notes</oboInOwl:shorthand>
<rdfs:label>development_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000011"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the ontogenic development of instances of this class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000012 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000012">
<obo:IAO_0000115>Notes on how similar or equivalent classes are represented in other ontologies.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000012</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>external_ontology_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>external_ontology_notes</oboInOwl:shorthand>
<rdfs:label>external_ontology_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000012"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on how similar or equivalent classes are represented in other ontologies.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000013 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000013">
<obo:IAO_0000115>Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000013</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>terminology_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>terminology_notes</oboInOwl:shorthand>
<rdfs:label>terminology_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000013"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000014 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000014">
<obo:IAO_0000115>Notes on how instances of this class functon biomechanically.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000014</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>action_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>action_notes</oboInOwl:shorthand>
<rdfs:label>actions_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000014"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on how instances of this class functon biomechanically.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000015 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000015">
<obo:IAO_0000115>Notes on the location, position or part-parents of instances of this class.</obo:IAO_0000115>
<obo:IAO_0000116>This annotation property may be replaced with an annotation property from an external ontology such as IAO</obo:IAO_0000116>
<oboInOwl:hasDbXref>UBPROP:0000015</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>location_notes</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>location_notes</oboInOwl:shorthand>
<rdfs:label>location_notes</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000015"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Notes on the location, position or part-parents of instances of this class.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000100 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000100">
<oboInOwl:hasDbXref>UBPROP:0000100</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>is_count_of</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>is_count_of</oboInOwl:shorthand>
<rdfs:label>is count of</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000101 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000101">
<obo:IAO_0000115>A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates).</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000101</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>preceding_element_is</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>preceding_element_is</oboInOwl:shorthand>
<rdfs:label>preceding element is</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000101"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates).</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000102 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000102">
<obo:IAO_0000115>A property used to indicate the position of an element where that element is of a type that is serially repeated linearly along some axis for which a total ordering exists. The ordering may represent an ancestral condition.</obo:IAO_0000115>
<oboInOwl:hasDbXref>UBPROP:0000102</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>repeated_element_number</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>repeated_element_number</oboInOwl:shorthand>
<rdfs:comment>The range is currently non-negative integer</rdfs:comment>
<rdfs:label>repeated element number</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000102"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A property used to indicate the position of an element where that element is of a type that is serially repeated linearly along some axis for which a total ordering exists. The ordering may represent an ancestral condition.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-6601-2165</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UBPROP_0000103 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000103">
<obo:IAO_0000115>x pharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch.</obo:IAO_0000115>
<obo:UBPROP_0000013>gill arch N = PA N-2. the term branchial_arch is ambiguous.</obo:UBPROP_0000013>
<obo:UBPROP_0000100 rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002539"/>
<obo:UBPROP_0000101 rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000096"/>
<oboInOwl:hasDbXref>UBPROP:0000103</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>pharyngeal_arch_number</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>pharyngeal_arch_number</oboInOwl:shorthand>
<rdfs:label>pharyngeal arch number</rdfs:label>
</owl:AnnotationProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000103"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>