-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathstatistics_utils.py
More file actions
477 lines (449 loc) · 15.7 KB
/
Copy pathstatistics_utils.py
File metadata and controls
477 lines (449 loc) · 15.7 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
"""Statistics helpers extracted from the GUI layer."""
from __future__ import annotations
from pathlib import Path
from mpmath import mp
from datalab_core.statistics_compute import compute_statistics as compute_statistics
def latex_escape(text: str) -> str:
mapping = {
"&": "\\&",
"%": "\\%",
"$": "\\$",
"#": "\\#",
"_": "\\_",
"{": "\\{",
"}": "\\}",
"~": "\\textasciitilde{}",
"^": "\\textasciicircum{}",
"\\": "\\textbackslash{}",
}
return "".join(mapping.get(ch, ch) for ch in str(text))
def _format_table_value(
value: mp.mpf,
sigma: mp.mpf | None,
digits: int,
use_dcolumn: bool,
uncertainty_digits: int | None = None,
*,
is_input: bool = True,
group_size: int = 3,
) -> tuple[str, bool]:
"""Return (text, needs_multicolumn)."""
from data_extrapolation_latex_latest import format_value_for_latex_file
# Normalize sigma to mp.mpf while preserving digits hint if provided
sigma_digits = uncertainty_digits
if sigma is not None and hasattr(sigma, "uncertainty_digits"):
sigma_digits = getattr(sigma, "uncertainty_digits", None) or sigma_digits
if sigma is not None and hasattr(sigma, "uncertainty"):
try:
sigma = sigma.uncertainty
except Exception:
pass
if sigma is not None:
try:
sigma = mp.mpf(sigma)
except Exception:
sigma = None
text = format_value_for_latex_file(
value,
sigma,
use_dcolumn=use_dcolumn,
latex_input_decimals=digits,
is_input=is_input,
latex_group_size=group_size,
uncertainty_digits=sigma_digits,
)
return text, False
def generate_statistics_latex(
value_col: str,
data_rows: list[tuple[mp.mpf, ...]],
sigma_rows: list[tuple[mp.mpf | None, ...]],
result: dict,
digits: int,
tex_path: str,
use_dcolumn: bool,
uncertainty_digits: int | None = None,
caption: str | None = None,
latex_group_size: int = 3,
):
from data_extrapolation_latex_latest import calculate_dcolumn_format_for_column, siunitx_column_spec
from datalab_latex.sisetup_block import build_sisetup_block
group_size = max(1, int(latex_group_size))
num_cols = len(data_rows[0]) if data_rows else 0
formatted_columns: list[list[str]] = [[] for _ in range(num_cols)]
for row_idx, row in enumerate(data_rows):
for col_idx in range(num_cols):
value = row[col_idx] if col_idx < len(row) else mp.mpf("0")
sigma = None
if sigma_rows and row_idx < len(sigma_rows) and col_idx < len(sigma_rows[row_idx]):
sigma = sigma_rows[row_idx][col_idx]
cell, _ = _format_table_value(
value,
sigma,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)
formatted_columns[col_idx].append(cell)
if use_dcolumn:
num_specs = [
calculate_dcolumn_format_for_column(formatted_columns[i], f"stats_data_col_{i}")
for i in range(num_cols)
]
else:
num_specs = [siunitx_column_spec(formatted_columns[i]) for i in range(num_cols)]
data_col_spec = "l" + ("" if not num_specs else " " + " ".join(num_specs))
summary_rows: list[tuple[str, str]] = []
summary_rows.append(
(
"Mean",
_format_table_value(
result["mean"],
result["std_mean"],
digits,
use_dcolumn,
uncertainty_digits,
is_input=False,
group_size=group_size,
)[0],
)
)
summary_rows.extend(
[
(
"Std. error",
_format_table_value(
result["std_mean"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
(
"Min",
_format_table_value(
result["v_min"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
(
"Max",
_format_table_value(
result["v_max"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
]
)
if not mp.isnan(result.get("std", mp.nan)):
summary_rows.append(
(
"Std. dev.",
_format_table_value(
result["std"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
)
)
lines = [
"\\documentclass{article}",
"\\usepackage{ifxetex}",
"\\usepackage{ifluatex}",
"\\ifxetex",
" \\usepackage{xeCJK}",
"\\else",
" \\ifluatex",
" \\usepackage{xeCJK}",
" \\else",
" \\usepackage[utf8]{inputenc}",
" \\usepackage[T1]{fontenc}",
" \\fi",
"\\fi",
"\\usepackage{amsmath}",
"\\usepackage{array}",
"\\usepackage{booktabs}",
"\\usepackage{threeparttable}",
"\\usepackage{geometry}",
"\\usepackage{graphicx}",
]
if use_dcolumn:
lines.append("\\usepackage{dcolumn}")
lines.append("\\newcolumntype{d}[1]{D{.}{.}{#1}}")
lines.append("\\usepackage{siunitx}")
# v2/v3-compatible \sisetup{...} block. ``digit-group-size`` was a
# siunitx-v3-only key whose hard-coded use here broke compiles
# against older TeX Live installs; the helper now emits a
# ``\@ifpackagelater`` guard so v2 falls back to the safe default.
lines.append(
build_sisetup_block(
group_size=group_size,
include_dcolumn=use_dcolumn,
).rstrip("\n")
)
title = f"Statistical Summary ({latex_escape(result.get('method_label', ''))})"
table_caption = caption if caption else f"Statistical summary for {latex_escape(value_col)}"
lines.extend(
[
"\\geometry{margin=1in}",
"\\begin{document}",
f"\\section*{{{title}}}",
f"Value column: \\texttt{{{latex_escape(value_col)}}}",
"",
"\\begin{table}[!ht]",
"\\centering",
f"\\caption{{{table_caption}}}",
f"\\begin{{tabular}}{{{data_col_spec}}}",
"\\toprule",
"Entry & " + " & ".join(
f"\\multicolumn{{1}}{{c}}{{{latex_escape(value_col) if num_cols == 1 else 'Col {}'.format(i + 1)}}}"
for i in range(num_cols)
) + " \\\\",
"\\midrule",
]
)
for idx in range(len(data_rows)):
row_cells = [formatted_columns[col_idx][idx] for col_idx in range(num_cols)]
lines.append(f"Input row {idx + 1} & " + " & ".join(row_cells) + " \\\\")
lines.extend(["\\bottomrule", "\\end{tabular}", "\\end{table}", ""])
# Summary table (single numeric column)
if use_dcolumn:
summary_num_spec = calculate_dcolumn_format_for_column(
[val for _, val in summary_rows],
"stats_summary",
)
else:
summary_num_spec = siunitx_column_spec([val for _, val in summary_rows])
summary_col_spec = f"l {summary_num_spec}"
lines.extend(
[
"\\begin{table}[!ht]",
"\\centering",
f"\\caption{{{table_caption} (Summary)}}",
f"\\begin{{tabular}}{{{summary_col_spec}}}",
"\\toprule",
"Entry & \\multicolumn{1}{c}{Value} \\\\",
"\\midrule",
]
)
for key, val in summary_rows:
lines.append(f"{latex_escape(key)} & {val} \\\\")
lines.extend(["\\bottomrule", "\\end{tabular}", "\\end{table}", "\\end{document}"])
Path(tex_path).write_text("\n".join(lines), encoding="utf-8")
return Path(tex_path)
def generate_statistics_latex_batches(
value_col: str,
batches: list[dict],
digits: int,
tex_path: str,
use_dcolumn: bool,
caption: str | None = None,
uncertainty_digits: int | None = None,
latex_group_size: int = 3,
):
from data_extrapolation_latex_latest import calculate_dcolumn_format_for_column, siunitx_column_spec
from datalab_latex.sisetup_block import build_sisetup_block
group_size = max(1, int(latex_group_size))
def _build_block(batch_idx: int, rows, sigma_rows, result, caption_text: str):
num_cols = len(rows[0]) if rows else 0
formatted_columns: list[list[str]] = [[] for _ in range(num_cols)]
for row_idx, row in enumerate(rows):
for col_idx in range(num_cols):
value = row[col_idx] if col_idx < len(row) else mp.mpf("0")
sigma = None
if sigma_rows and row_idx < len(sigma_rows) and col_idx < len(sigma_rows[row_idx]):
sigma = sigma_rows[row_idx][col_idx]
cell, _ = _format_table_value(
value,
sigma,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)
formatted_columns[col_idx].append(cell)
if use_dcolumn:
num_specs = [
calculate_dcolumn_format_for_column(formatted_columns[i], f"stats_batch_{batch_idx}_col_{i}")
for i in range(num_cols)
]
else:
num_specs = [siunitx_column_spec(formatted_columns[i]) for i in range(num_cols)]
data_col_spec = "l" + ("" if not num_specs else " " + " ".join(num_specs))
summary_rows: list[tuple[str, str]] = [
(
"Mean",
_format_table_value(
result["mean"],
result["std_mean"],
digits,
use_dcolumn,
uncertainty_digits,
is_input=False,
group_size=group_size,
)[0],
),
(
"Std. error",
_format_table_value(
result["std_mean"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
(
"Min",
_format_table_value(
result["v_min"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
(
"Max",
_format_table_value(
result["v_max"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
),
]
if not mp.isnan(result.get("std", mp.nan)):
summary_rows.append(
(
"Std. dev.",
_format_table_value(
result["std"],
None,
digits,
use_dcolumn,
uncertainty_digits,
is_input=True,
group_size=group_size,
)[0],
)
)
lines_block = [
f"\\subsection*{{Statistics: Batch {batch_idx}}}",
f"Value column: \\texttt{{{latex_escape(value_col)}}}",
"",
"\\begin{table}[!ht]",
"\\centering",
f"\\caption{{{caption_text}}}",
f"\\begin{{tabular}}{{{data_col_spec}}}",
"\\toprule",
"Entry & " + " & ".join(
f"\\multicolumn{{1}}{{c}}{{{latex_escape(value_col) if num_cols == 1 else 'Col {}'.format(i + 1)}}}"
for i in range(num_cols)
) + " \\\\",
"\\midrule",
]
for idx in range(len(rows)):
row_cells = [formatted_columns[col_idx][idx] for col_idx in range(num_cols)]
lines_block.append(f"Input row {idx + 1} & " + " & ".join(row_cells) + " \\\\")
lines_block.extend(["\\bottomrule", "\\end{tabular}", "\\end{table}", ""])
if use_dcolumn:
summary_num_spec = calculate_dcolumn_format_for_column(
[val for _, val in summary_rows],
f"stats_batch_{batch_idx}_summary",
)
else:
summary_num_spec = siunitx_column_spec([val for _, val in summary_rows])
summary_col_spec = f"l {summary_num_spec}"
lines_block.extend(
[
"\\begin{table}[!ht]",
"\\centering",
f"\\caption{{{caption_text} (Summary)}}",
f"\\begin{{tabular}}{{{summary_col_spec}}}",
"\\toprule",
"Entry & \\multicolumn{1}{c}{Value} \\\\",
"\\midrule",
]
)
for key, val in summary_rows:
lines_block.append(f"{latex_escape(key)} & {val} \\\\")
lines_block.extend(["\\bottomrule", "\\end{tabular}", "\\end{table}", ""])
return lines_block
lines = [
"\\documentclass{article}",
"\\usepackage{ifxetex}",
"\\usepackage{ifluatex}",
"\\ifxetex",
" \\usepackage{xeCJK}",
"\\else",
" \\ifluatex",
" \\usepackage{xeCJK}",
" \\else",
" \\usepackage[utf8]{inputenc}",
" \\usepackage[T1]{fontenc}",
" \\fi",
"\\fi",
"\\usepackage{amsmath}",
"\\usepackage{array}",
"\\usepackage{booktabs}",
"\\usepackage{threeparttable}",
"\\usepackage{geometry}",
"\\usepackage{graphicx}",
]
if use_dcolumn:
lines.append("\\usepackage{dcolumn}")
lines.append("\\newcolumntype{d}[1]{D{.}{.}{#1}}")
lines.append("\\usepackage{siunitx}")
# v2/v3-compatible \sisetup{...} block (see top-of-file note).
lines.append(
build_sisetup_block(
group_size=group_size,
include_dcolumn=use_dcolumn,
).rstrip("\n")
)
title = f"Statistical Summary ({latex_escape(value_col)})"
base_caption = caption if caption else f"Statistical summary for {latex_escape(value_col)}"
lines.extend(
[
"\\geometry{margin=1in}",
"\\begin{document}",
f"\\section*{{{latex_escape(title)}}}",
]
)
for batch in batches:
idx = batch.get("index") or (len(lines))
rows = batch.get("rows", [])
sigma_rows = batch.get("sigma_rows", [])
result = batch.get("result", {})
caption_text = f"{base_caption} (Batch {idx})"
lines.extend(_build_block(idx, rows, sigma_rows, result, caption_text))
lines.append("\\end{document}")
Path(tex_path).write_text("\n".join(lines), encoding="utf-8")
return Path(tex_path)