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Pull requests: DataBiosphere/toil

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Pull requests list

Harden CPU overuse warning checks and add unit tests
#5512 opened May 5, 2026 by avnig05 Collaborator Loading…
19 tasks
Update AWS instance lists to prepare for release
#5510 opened May 4, 2026 by adamnovak Member Loading…
Retry on ENOLCK from NFS lockd in fcntl-based locks (#4846)
#5508 opened Apr 30, 2026 by annagiroti Collaborator Loading…
19 tasks
1
6
Evaluate CWL jobs that should be skipped on the leader
#5507 opened Apr 30, 2026 by lonbar • Draft
19 tasks
1
Pass CWL ToolTimeLimit.timelimit to slurm job submission
#5502 opened Apr 23, 2026 by lonbar • Draft
1 of 19 tasks
6
Update mypy-boto3-iam requirement from <2,>=1.28.3.post2 to >=1.42.64,<2 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#5500 opened Apr 22, 2026 by dependabot Bot Loading…
Update pytest-httpserver requirement from <2,>=1.1.3 to >=1.1.5,<2 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#5499 opened Apr 22, 2026 by dependabot Bot Loading…
Update enlighten requirement from <2,>=1.5.2 to >=1.14.1,<2 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#5498 opened Apr 22, 2026 by dependabot Bot Loading…
Update pypubsub requirement from <5,>=4.0.3 to >=4.0.7,<5 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#5497 opened Apr 22, 2026 by dependabot Bot Loading…
Update setuptools requirement from >=64 to >=82.0.1 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#5494 opened Apr 20, 2026 by dependabot Bot Loading…
Add script to clean up quay.io.
#3772 opened Sep 9, 2021 by DailyDreaming Member • Draft
19 tasks
7
CWL job chaining tests
#3696 opened Jul 2, 2021 by douglowe Contributor Loading…
19 tasks
13
Add disk usage log message at start of Toil run.
#3516 opened Mar 27, 2021 by DailyDreaming Member Loading…
19 tasks
1
1
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