A plugin for doing manual instance segmentation.
Maybe very similar to zarpaint
git clone https://github.com/Hekstra-Lab/napari-labeller
cd napari-labeller
conda create -n labeller -c conda-forge python=3.9
conda activate labeller
pip install "napari[all]"
pip install -e .You can then launch napari with extension active by running:
napari -w napari-labeller
-
q: erase -
w: fill -
e: paint -
r: pick -
t: create new label -
scroll: modify brush size when in paint mode -
Shift + Scroll: scrub through time points
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-labeller" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.