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Python 3.13 install fails due to dependency resolution forcing NumPy source build

Status: Open.

#405 In MannLabs/scPortrait;

· falconsmilie opened on May 12, 2026

vmin and vmax are not accessible parameters for cell_grid_multi_channel

Status: Open.

#398 In MannLabs/scPortrait;

· sophiamaedler opened on May 5, 2026

write_h5sc missing some sanity checks

Status: Open.

#397 In MannLabs/scPortrait;

· sophiamaedler opened on May 5, 2026

make chunking parameter for h5sc storage configurable by user

Status: Open.

#378 In MannLabs/scPortrait;

· sophiamaedler opened on Mar 1, 2026

processing multiple images

Status: Open.

#365 In MannLabs/scPortrait;

· linzhangTuesday opened on Feb 3, 2026

confocal data workflow/Golgi data reproduce

Status: Open.

#363 In MannLabs/scPortrait;

· linzhangTuesday opened on Jan 30, 2026

add suport for zstd compression of h5sc files

enhancementNew feature or requestNew feature or request

Status: Open.

#345 In MannLabs/scPortrait;

· sophiamaedler opened on Nov 11, 2025

[BUG] graph-tool version number

Status: Open.

#314 In MannLabs/scPortrait;

· sophiamaedler opened on Aug 7, 2025

accelerate centroid calculation

Status: Open.

#289 In MannLabs/scPortrait;

· sophiamaedler opened on Apr 17, 2025

Transformations in sdata image objects not properly applied throughout scPortrait workflow

Status: Open.

#280 In MannLabs/scPortrait;

· machth opened on Apr 10, 2025

[CODE IMPROVEMENT] directly access results from spatialdata object without need to memory-mapping

Status: Open.

#218 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 25, 2025

[CODE IMPROVEMENT] add support for single-cell extraction both with HDF5 and Zarr backend

Status: Open.

#217 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 25, 2025