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[SCHEMATIC-360] Add script to write jsonschemas to a synapse table#1642
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thomasyu888 wants to merge 6 commits intodevelopfrom
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[SCHEMATIC-360] Add script to write jsonschemas to a synapse table#1642thomasyu888 wants to merge 6 commits intodevelopfrom
thomasyu888 wants to merge 6 commits intodevelopfrom
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BryanFauble
reviewed
Sep 8, 2025
| # exclude HTAN1, HTAN2, and NF schemas as they have their own JSONschema organizations | ||
| df = df[~df["dcc"].isin(["htan", "htan2", "nf"])] | ||
| table = Table(id="syn69735275").get(include_columns=True) | ||
| table.upsert_rows(values=df, primary_keys=["uri"]) |
Member
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Great to see this upsert functionality getting some use!
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Author
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This could probably be added to the extensions package instead of this repo |
andrewelamb
reviewed
Oct 15, 2025
| """ | ||
| syn = synapseclient.login() | ||
| # json_schema_organizations = ["sage.schemas.v2571", "sage.schemas.v2581"] | ||
| json_schema_organizations = ["sage.schemas.v2571", "sage.schemas.v2581"] |
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Would it make sense to have the orgs as a parameter to the main function so that if/when we add new orgs we wouldn't have to update this?
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Problem:
Currently, we maintain a Confluence page manually with the JSON schemas we generate that can be used for Curator MVP. This won't scale as we create more JSON schemas.
Solution:
Add ad-hoc script to write jsonschemas that DPE generates to a synapse table for Curator MVP. This is partially doing some of schematic-360 work and adds a 'script' directory
Testing:
View Synapse table here: https://www.synapse.org/Synapse:syn69735275/tables/