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Log images and matrices using fancylog#123

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saarah815 wants to merge 95 commits into
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log_images_and_matrices
Draft

Log images and matrices using fancylog#123
saarah815 wants to merge 95 commits into
mainfrom
log_images_and_matrices

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@saarah815

@saarah815 saarah815 commented Aug 11, 2025

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Description

What is this PR

  • Bug fix
  • Addition of a new feature
  • Other

What does this PR do?

Allows for logging of rotated atlas and its corresponding rotation matrices and metadata at each iteration of Bayesian Optimisation. Outputs paths of all saved files in main log. Helpful debugging tool.

References

#99

How has this PR been tested?

Does this PR require an update to the documentation?

Yes.

Checklist:

  • The code has been tested locally
  • Tests have been added to cover all new functionality (unit & integration)
  • The documentation has been updated to reflect any changes
  • The code has been formatted with pre-commit

saarah815 and others added 30 commits June 10, 2025 19:07
Co-authored-by: Igor Tatarnikov <61896994+IgorTatarnikov@users.noreply.github.com>
@codecov

codecov Bot commented Aug 11, 2025

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Codecov Report

❌ Patch coverage is 92.54902% with 19 lines in your changes missing coverage. Please review.
✅ Project coverage is 91.24%. Comparing base (f3fafbf) to head (d5d20c5).

Files with missing lines Patch % Lines
...inglobe_registration/automated_target_selection.py 54.83% 14 Missing ⚠️
brainglobe_registration/utils/logging.py 85.71% 3 Missing ⚠️
brainglobe_registration/registration_widget.py 97.22% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #123      +/-   ##
==========================================
+ Coverage   91.08%   91.24%   +0.16%     
==========================================
  Files          13       15       +2     
  Lines         998     1234     +236     
==========================================
+ Hits          909     1126     +217     
- Misses         89      108      +19     

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2 participants