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1. atac-rna-effector-cd4 atac-rna-effector-cd4 Public

   Bulk ATAC-seq and RNA-seq integration pipeline reproducing Calderon et al. 2019

   HTML

2. bulkRNAseq-ccle bulkRNAseq-ccle Public

   End-to-end R/Bioconductor workflow for CCLE Colon bulk RNA-seq analysisi: PCA, Clustering & DESeq2

3. VCF-annotation-pipeline VCF-annotation-pipeline Public

   A shell script for automated variant annotation and functional impact filtering using SnpEff, designed for clinical bioinformatics workflows.

   HTML

4. GEO-metadata-extractor GEO-metadata-extractor Public

   A Python script for automated extraction and classification of metadata from NCBI Gene Expression Omnibus (GEO) datasets.

   Python

5. Epigenetic-pipeline-for-gene-regulatory-network-exlporation Epigenetic-pipeline-for-gene-regulatory-network-exlporation Public

   Python

6. Clinical_report_based_on_VCF_data_and_ACMG_guidelines Clinical_report_based_on_VCF_data_and_ACMG_guidelines Public

   Jupyter Notebook