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Add skDER/CiDDER for bin dereplication

enhancementNew feature or requestNew feature or request

Status: Open.

#1024 In nf-core/mag;

· dialvarezs opened on Apr 14, 2026

Add myloasm

enhancementNew feature or requestNew feature or request

Status: Open.

#1023 In nf-core/mag;

· dialvarezs opened on Apr 14, 2026

[tracker] new tools

enhancementNew feature or requestNew feature or request

Status: Open.

#1022 In nf-core/mag;

· dialvarezs opened on Apr 14, 2026

GTDBTK_CLASSIFYWF should have an option to run in one go

enhancementNew feature or requestNew feature or request

Status: Open.

#1007 In nf-core/mag;

· sarah-shah-bioinf opened on Mar 30, 2026

Add gunc_checkm_summary.tsv table to `bin_summary.tsv

enhancementNew feature or requestNew feature or request

Status: Open.

#982 In nf-core/mag;

· jfy133 opened on Feb 13, 2026

Add DeepMAsED to the pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#980 In nf-core/mag;

· amizeranschi opened on Feb 11, 2026

BOWTIE2_ASSEMBLY_ALIGN fails with samtools "-@" option under conda profile

bugSomething isn't workingSomething isn't working

Status: Open.

#978 In nf-core/mag;

· Ruiqi-CUB opened on Feb 8, 2026

Add dedicated parameters for Trimmomatic adapter clipping

enhancementNew feature or requestNew feature or request

Status: Open.

#971 In nf-core/mag;

· Pranjal-Bioinfo opened on Jan 27, 2026

Count table after mapping reads back to the dereplicated MAGs

enhancementNew feature or requestNew feature or request

Status: Open.

#955 In nf-core/mag;

· richrr opened on Dec 3, 2025

Better document BUSCO run by default, and how to turn it off

enhancementNew feature or requestNew feature or request

Status: Open.

#951 In nf-core/mag;

· jfy133 opened on Dec 2, 2025

GPU acceleration for COMEBin and SemiBin2

enhancementNew feature or requestNew feature or request

Status: Open.

#936 In nf-core/mag;

· d4straub opened on Nov 19, 2025

Create a small geNomad database for running tests

enhancementNew feature or requestNew feature or request

Status: Open.

#917 In nf-core/mag;

· dialvarezs opened on Nov 6, 2025