feature(auto-import-codes) Added script for automatically importing a…

docker/openemr/8.0.1/auto_import_codes.php

@@ -0,0 +1,120 @@
+#!/usr/bin/env php
+<?php
+/**
+ * =======================================
+ * OpenEMR Automated Code Import
+ * =======================================
+ * This script walks through a directory tree up to one level to find archives of Code System databases.
+ *
+ * The import limit here is dictated by available functionality in OpenEMR. Currently, expect to import RXNORM,
+ * SNOMED, ICD9, ICD10 CM, ICD10 PCS, CQM_VALUESET, and any arbitrary dataset that conforms to the VALUESET format.
+ *
+ * Usage:
+ *   php auto_import_codes.php [dir_root]
+ *
+ * Example:
+ *   php auto_import_codes.php
+ *   php auto_import_codes.php codes
+ * ============================================================================
+ * @package   OpenEMR
+ * @link      https://www.open-emr.org
+ * @author    Luis M. Santos, MD <lsantos@medicalmasses.com>
+ * @copyright Copyright (c) 2026 Luis M. Santos, MD <lsantos@medicalmasses.com>
+ * @copyright Copyright (c) 2026 MedicalMasses L.L.C. <https://medicalmasses.com>
+ * @license   https://github.com/openemr/openemr/blob/master/LICENSE GNU General Public License 3
+ */
+$sitePath = '/var/www/localhost/htdocs/openemr';
+$_GET['site'] = 'default';
+$ignoreAuth = true;
+$sessionAllowWrite = true;
+chdir($sitePath);
+
+// Load OpenEMR's Composer autoloader
+// This gives us access to all OpenEMR classes, including the Installer class
+require_once 'interface/globals.php';
+require_once 'library/standard_tables_capture.inc.php';
+
+function import_dir(string $type, $importFunction): void {
+    foreach (glob("*.zip") as $file) {
+        # Copy to temp
+        echo " [" . $type . "] Copying file => " . $file  . "!\n";
+        if (!temp_copy($file, $type)) {
+            error_log("Failed to copy " . $file . " of type " . $type);
+            return;
+        }
+
+        # Unpack
+        echo " [" . $type . "] Uncompressing file => " . $file  . "!\n";
+        if (!temp_unarchive($file, $type)) {
+            error_log("Failed to unzip " . $file . " of type " . $type);
+        }
+
+        # Import data
+        echo " [" . $type . "] Importing file => " . $file  . "!\n";
+        $importFunction($type);
+
+        # Cleanup
+        echo " [" . $type . "] Cleaning up import for file => " . $file  . "!\n";
+        temp_dir_cleanup($type);
+    }
+}
+
+function import_snomed(string $path): void {
+    // TODO: Consider including auto detection in OpenEMR at a later date.
+    try {
+        snomedRF2_import();
+    } catch (Exception $e) {
+        try {
+            snomed_import(true);
+        } catch (Exception $e) {
+            snomed_import();
+        }
+    }
+}
+
+function import(string $path): void {
+    # Change to import directory
+    chdir($path);
+
+    # Scan directory
+    $dirs = scandir('./');
+    echo "Available directories => ". $dirs . "\n";
+    foreach ($dirs as $dir) {
+        if ($dir == "." || $dir == "..") {
+            continue;
+        }
+
+        if(is_dir($dir)) {
+            # Go into directory
+            echo "Entering directory => ". $dir . "\n";
+            chdir($dir);
+
+            match ($dir) {
+                "icd9" => import_dir("ICD9", function ($type) {icd_import($type);}),
+                "icd10" => import_dir("ICD10", function ($type) {icd_import($type);}),
+                "rxnorm" => import_dir("RXNORM", function () {rxnorm_import(false);}),
+                "snomed" => import_dir("SNOMED", function ($file) {import_snomed($file);}),
+                "cqm", "cqm_valueset" => import_dir("CQM_VALUESET", function ($type) {valueset_import($type);}),
+                default => import_dir("VALUESET", function ($type) {valueset_import($type);}),
+            };
+
+            # Restore parent path for the next iteration
+            echo "Exiting directory => ". $dir . " back to ". $path . "\n";
+            chdir($path);
+        }
+    }
+}
+
+// Ensure we're running from CLI
+if (php_sapi_name() !== 'cli') {
+    throw RuntimeException('This tool can only be run from the command line');
+}
+
+$contribPath = realpath($sitePath . '/contrib');
+if ($argc > 1) {
+    if (strlen($argv[1])) {
+        $contribPath = realpath($argv[1]);
+    }
+}
+
+import($contribPath);

docker/openemr/flex/auto_import_codes.php

@@ -0,0 +1,120 @@
+#!/usr/bin/env php
+<?php
+/**
+ * =======================================
+ * OpenEMR Automated Code Import
+ * =======================================
+ * This script walks through a directory tree up to one level to find archives of Code System databases.
+ *
+ * The import limit here is dictated by available functionality in OpenEMR. Currently, expect to import RXNORM,
+ * SNOMED, ICD9, ICD10 CM, ICD10 PCS, CQM_VALUESET, and any arbitrary dataset that conforms to the VALUESET format.
+ *
+ * Usage:
+ *   php auto_import_codes.php [dir_root]
+ *
+ * Example:
+ *   php auto_import_codes.php
+ *   php auto_import_codes.php codes
+ * ============================================================================
+ * @package   OpenEMR
+ * @link      https://www.open-emr.org
+ * @author    Luis M. Santos, MD <lsantos@medicalmasses.com>
+ * @copyright Copyright (c) 2026 Luis M. Santos, MD <lsantos@medicalmasses.com>
+ * @copyright Copyright (c) 2026 MedicalMasses L.L.C. <https://medicalmasses.com>
+ * @license   https://github.com/openemr/openemr/blob/master/LICENSE GNU General Public License 3
+ */
+$sitePath = '/var/www/localhost/htdocs/openemr';
+$_GET['site'] = 'default';
+$ignoreAuth = true;
+$sessionAllowWrite = true;
+chdir($sitePath);
+
+// Load OpenEMR's Composer autoloader
+// This gives us access to all OpenEMR classes, including the Installer class
+require_once 'interface/globals.php';
+require_once 'library/standard_tables_capture.inc.php';
+
+function import_dir(string $type, $importFunction): void {
+    foreach (glob("*.zip") as $file) {
+        # Copy to temp
+        echo " [" . $type . "] Copying file => " . $file  . "!\n";
+        if (!temp_copy($file, $type)) {
+            error_log("Failed to copy " . $file . " of type " . $type);
+            return;
+        }
+
+        # Unpack
+        echo " [" . $type . "] Uncompressing file => " . $file  . "!\n";
+        if (!temp_unarchive($file, $type)) {
+            error_log("Failed to unzip " . $file . " of type " . $type);
+        }
+
+        # Import data
+        echo " [" . $type . "] Importing file => " . $file  . "!\n";
+        $importFunction($type);
+
+        # Cleanup
+        echo " [" . $type . "] Cleaning up import for file => " . $file  . "!\n";
+        temp_dir_cleanup($type);
+    }
+}
+
+function import_snomed(string $path): void {
+    // TODO: Consider including auto detection in OpenEMR at a later date.
+    try {
+        snomedRF2_import();
+    } catch (Exception $e) {
+        try {
+            snomed_import(true);
+        } catch (Exception $e) {
+            snomed_import();
+        }
+    }
+}
+
+function import(string $path): void {
+    # Change to import directory
+    chdir($path);
+
+    # Scan directory
+    $dirs = scandir('./');
+    echo "Available directories => ". $dirs . "\n";
+    foreach ($dirs as $dir) {
+        if ($dir == "." || $dir == "..") {
+            continue;
+        }
+
+        if(is_dir($dir)) {
+            # Go into directory
+            echo "Entering directory => ". $dir . "\n";
+            chdir($dir);
+
+            match ($dir) {
+                "icd9" => import_dir("ICD9", function ($type) {icd_import($type);}),
+                "icd10" => import_dir("ICD10", function ($type) {icd_import($type);}),
+                "rxnorm" => import_dir("RXNORM", function () {rxnorm_import(false);}),
+                "snomed" => import_dir("SNOMED", function ($file) {import_snomed($file);}),
+                "cqm", "cqm_valueset" => import_dir("CQM_VALUESET", function ($type) {valueset_import($type);}),
+                default => import_dir("VALUESET", function ($type) {valueset_import($type);}),
+            };
+
+            # Restore parent path for the next iteration
+            echo "Exiting directory => ". $dir . " back to ". $path . "\n";
+            chdir($path);
+        }
+    }
+}
+
+// Ensure we're running from CLI
+if (php_sapi_name() !== 'cli') {
+    throw RuntimeException('This tool can only be run from the command line');
+}
+
+$contribPath = realpath($sitePath . '/contrib');
+if ($argc > 1) {
+    if (strlen($argv[1])) {
+        $contribPath = realpath($argv[1]);
+    }
+}
+
+import($contribPath);