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45 repositories

EMILY
Public
EMILY: EMotion Identification with Lightning, Y'all
Python
•
MIT License
•0•0•0•0•Updated Apr 28, 2026Apr 28, 2026
vllm_example
Public
Example code for using vllm to serve an LLM and make requests to it.
Python
•0•1•0•0•Updated Nov 15, 2025Nov 15, 2025
GutBrainIE
Public
Python
•0•0•0•0•Updated Aug 6, 2025Aug 6, 2025
NERLink
Public
Python
•0•0•0•0•Updated Feb 14, 2025Feb 14, 2025
GoProRecorder
Public
Python
•0•0•0•0•Updated Apr 4, 2024Apr 4, 2024
Prediction-of-Structural-Color-of-Liquid-Crystals-via-Machine-Learning
Public
Python
•0•0•0•0•Updated Mar 8, 2024Mar 8, 2024
PDFtoTextExtractor
Public
Python
•3•1•0•0•Updated Nov 30, 2023Nov 30, 2023
NNLBD
Public
Neural Network Architectures For Open and Closed Literature-Based Discovery
Python
•0•4•0•0•Updated May 28, 2023May 28, 2023
RelEx
Public
Python
•0•8•9•13•Updated Feb 10, 2023Feb 10, 2023
SMM4H
Public
Python
•0•3•0•15•Updated Dec 27, 2022Dec 27, 2022
medaCy
Public
:hospital: Medical Text Mining and Information Extraction with spaCy
machine-learning natural-language-processing information-extraction
machine-learning natural-language-processing information-extraction spacy metamap medical-natural-language-processing clinical-text-processing medical-text-mining
Python
•
GNU General Public License v3.0
•92•438•20•3•Updated Nov 1, 2022Nov 1, 2022
PaperScraper
Public
A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journals.
natural-language-processing web-scraping selenium-webdriver
natural-language-processing web-scraping selenium-webdriver scientific-publications pubmed-articles-grabber journal-web-scraper
Python
•
GNU General Public License v3.0
•68•224•2•1•Updated Oct 14, 2022Oct 14, 2022
python_tools
Public
Tools to support text processing
Python
•
GNU Affero General Public License v3.0
•0•2•0•0•Updated Jul 29, 2022Jul 29, 2022
PDF2TXT
Public
Converts a pdf document to text.
Java
•
Apache License 2.0
•2•1•0•0•Updated Apr 15, 2022Apr 15, 2022
RelEx-GCN
Public
Python
•0•0•0•0•Updated Mar 10, 2022Mar 10, 2022
RelEx-CNN
Public
Python
•0•0•0•0•Updated Feb 15, 2022Feb 15, 2022
BioCreative-VII-Track1
Public
Jupyter Notebook
•0•2•0•0•Updated Oct 19, 2021Oct 19, 2021
KrimpaTool
Public
A tool for retrieving full text of papers from a DOI
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 1, 2021Oct 1, 2021
medinify
Public
Python text classification package with a focus on medical text.
Python
•
GNU General Public License v3.0
•9•17•12•0•Updated Jun 28, 2021Jun 28, 2021
PLOTnikov
Public
Python
•0•0•0•0•Updated Apr 17, 2021Apr 17, 2021
multitasking_transformers
Public
Multitask Learning with Pretrained Transformers
deep-learning bert multi-task-learning
deep-learning bert multi-task-learning clinical-nlp
Python
•
MIT License
•9•40•2•0•Updated Mar 20, 2021Mar 20, 2021
elise
Public
Entity Labeling Independent Sentences with ELMo
Python
•0•0•0•0•Updated Dec 17, 2020Dec 17, 2020
n2c2_2018_task2_significance
Public
Python
•3•0•0•0•Updated Oct 21, 2020Oct 21, 2020
multitasking_bert-1
Public
Python
•1•1•0•0•Updated Oct 13, 2020Oct 13, 2020
pseudobert
Public
Python
•1•0•0•0•Updated Aug 27, 2020Aug 27, 2020
medaCy_model_clinical_notes
Public
A medaCy compatible model for clinical note information extraction.
Python
•
GNU General Public License v3.0
•4•11•3•0•Updated May 25, 2020May 25, 2020
medinify-datasets
Public
Datasets for use with the Medinify package
0•0•0•0•Updated Aug 23, 2019Aug 23, 2019
medaCy_demo
Public
A web app that demonstrates medaCy using models created by VCU's Nanoinformatics Lab
HTML
•2•1•0•0•Updated Apr 26, 2019Apr 26, 2019
medaCy_dataset_template
Public
a template for creating medaCy compatible datasets
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Mar 21, 2019Mar 21, 2019
NER-OUS
Public
Biomedical NER system utilizing Bidirectional LSTM-CRF model.
Python
•2•2•0•1•Updated Mar 5, 2019Mar 5, 2019

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NLP@VCU

All

All

45 repositories

EMILY

vllm_example

GutBrainIE

NERLink

GoProRecorder

Prediction-of-Structural-Color-of-Liquid-Crystals-via-Machine-Learning

PDFtoTextExtractor

NNLBD

RelEx

SMM4H

medaCy

PaperScraper

python_tools

PDF2TXT

RelEx-GCN

RelEx-CNN

BioCreative-VII-Track1

KrimpaTool

medinify

PLOTnikov

multitasking_transformers

elise

n2c2_2018_task2_significance

multitasking_bert-1

pseudobert

medaCy_model_clinical_notes

medinify-datasets

medaCy_demo

medaCy_dataset_template

NER-OUS

All

All

Repositories list

45 repositories