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    18 repositories

    • med-cafe

      Public
      A project to study a short allelic series of mediator mutants using transcriptomic phenotypes.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•4•Updated Mar 23, 2026Mar 23, 2026

    • ctd_paper

      Public
      Python
      •2•0•0•0•Updated Oct 18, 2019Oct 18, 2019

    • alaska

      Public
      Automated and friendly RNA-seq analysis (deprecated)
      pythondockerautomation
      pythondockerautomationquality-controlrna-seqpipelineanalysisportalkallistoalaska
      Python
      •
      MIT License
      •0•6•8•0•Updated May 21, 2019May 21, 2019

    • expression-plotter

      Public
      Automated data analysis and plot generator.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 27, 2018Oct 27, 2018

    • Angeles_Leighton_2016

      Public
      bioinformaticsrna-seqcelegans
      bioinformaticsrna-seqcelegans
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Jun 21, 2018Jun 21, 2018

    • mprsq

      Public
      Massively Parallel RNA-seq Project
      bioinformaticsrna-seqgenetics
      bioinformaticsrna-seqgeneticstranscriptome
      Jupyter Notebook
      •
      MIT License
      •1•5•0•0•Updated May 16, 2018May 16, 2018

    • RNA_seq_template

      Public
      A template for non-single-worm RNA-seq projects
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2018Jan 23, 2018

    • WormLabCaltech.github.io

      Public
      Build a Jekyll blog in minutes, without touching the command line.
      CSS
      •
      MIT License
      •35k•0•0•0•Updated Nov 25, 2017Nov 25, 2017

    • dauerRNAseq

      Public
      R
      •
      MIT License
      •2•1•0•0•Updated Nov 10, 2017Nov 10, 2017

    • clustering_on_transcript_compatibility_counts

      Public
      Clustering cells from single cell RNA seq assays
      Jupyter Notebook
      •
      MIT License
      •20•0•0•0•Updated Jul 14, 2017Jul 14, 2017

    • ResidentWorm

      Public
      Compares worm occupancy between different regions of interest.
      Python
      •0•0•4•0•Updated May 4, 2017May 4, 2017

    • DigiTracker_Suite

      Public
      The Caltech Worm Tracker (Sternberg Lab)
      C++
      •0•1•0•0•Updated Mar 31, 2017Mar 31, 2017

    • cGAL

      Public
      Everything cGAL, the GAL4-UAS system for C. elegans
      Jupyter Notebook
      •0•0•0•0•Updated Mar 31, 2017Mar 31, 2017

    • PQpython_utils

      Public
      Python
      •2•0•0•0•Updated Mar 12, 2017Mar 12, 2017

    • GSATemplate

      Public
      LaTeX templates for Genetics and G3 manuscripts, from Overleaf
      TeX
      •3•0•0•0•Updated Sep 8, 2016Sep 8, 2016

    • QuinteroSternberg2016

      Public
      Python
      •2•0•0•0•Updated May 3, 2016May 3, 2016

    • pycelegans-2.0

      Public
      PyCelegans code and examples, generative statistical algorithm for complex postures
      Mathematica
      •1•0•0•0•Updated Sep 1, 2015Sep 1, 2015

    • pycelegans-1.0

      Public
      Parallel image processing code that identifies C. elegans in images
      Python
      •2•0•0•0•Updated Aug 26, 2015Aug 26, 2015
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