Taxon-aware analysis of clustered protein sequences
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Jul 1, 2024 - Python
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proteome-clustering
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Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics annotation clustering biology gene-families bioinformatics-analysis proteome-clustering downstream-analysis orthomcl pangenome singletons plasmodium duplicates-removal gene-family binary-matrix accessory-genes coregenome pangenome-inference pangenome-pipeline count-matrix
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Feb 21, 2022 - Python
NextFlow pipelines and Python scripts for comprehensive analyses of proteomes data, providing: Clustering via MMseqs2; Labelling, filtering and aggregation of clusters; Alignments and Variation analyses; Meta clustering comparisons
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May 27, 2026 - Python
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